Ruihan Zhang

Ruihan Zhang received her BS in Biology from the Zhiyuan Honor Program at Shanghai Jiao Tong University. As a graduate student at the MIT Media Lab, she worked on applying new technologies to the study of the zebrafish brain and the worm C. elegans, co-supervised by Dr. Joseph Jacobson and Dr. Ed Boyden.

Publications

Expansion Revealing of Pathology Resolves Nanostructures Associated with Inflammatory Phenotypes in COVID-19 Decedent Human Brain Tissue

bioRxiv | 2026

Alice E. Stanton*, Jinyoung Kang*, Joel W. Blanchard, Carles A. Boix, Margaret E. Schroeder, Youngmi Lee, Hanquan Su, Shiwei Wang, Eunah Yu, Amauche Emenari, Zhuyu Peng, Emre Agbas, Oyku Cerit, Demian Park, Ruihan Zhang, David A. Bennett, Peng Yin, Manolis Kellis, Robert Langer, Edward Boyden**, Li-Huei Tsai** (2026) Expansion Revealing of Pathology Resolves Nanostructures Associated with Inflammatory Phenotypes in COVID-19 Decedent Human Brain Tissue, bioRxiv 2026.05.14.725177; doi: https://doi.org/10.64898/2026.05.14.725177. (*, contributed equally; **, co-corresponding)

3D Domain Adaptive Instance Segmentation via Cyclic Segmentation GANs

IEEE Journal of Biomedical and Health Informatics | 2023

Lauenburg L, Lin Z, Zhang R, Santos MD, Huang S, Arganda-Carreras I, Boyden ES, Pfister H, Wei D (2023) 3D Domain Adaptive Instance Segmentation via Cyclic Segmentation GANs, IEEE Journal of Biomedical and Health Informatics 27(8):4018-4027.

Recording of cellular physiological histories along optically readable self-assembling protein chains

Nature Biotechnology | 2023

Linghu C, An B, Shpokayte M, Celiker OT, Shmoel N, Zhang R, Zhang C, Park D, Park WM, Ramirez S, Boyden ES (2023) Recording of cellular physiological histories along optically readable self-assembling protein chains, Nature Biotechnology 41(5):640-651.